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Epigenome_Informatics_Workshop

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  • FAQ

FAQ

1. Getting Started with Genboree

  • How Do I Upload Files Onto The Workbench? Generic Example
  • How do I create a new Genboree Database?
  • How do I create a new Genboree Group?
  • How do I create a new Genboree Project?
  • How do I create, edit, delete, and upload annotations / entry points to a Genboree Database?
  • What are Annotations?
  • What are Entry Points?
  • What data can I upload for analysis onto Genboree?
  • What is a Genome in Genboree?
  • What is an Entity List?
  • What is the LFF Annotation Format?

2. Using the Grid Viewer

  • How do I use the grid to create a List of Tracks? Assay Type vs Sample Type
  • How do I use the grid to create two Lists of Tracks? Individual vs. Individual

3. Track Operations

  • Converting BED files to Read Density Signal Tracks
  • How do I copy / move tracks from one database to another?

4. Genboree Workbench Jobs

  • How do I check the status of jobs that I have submitted?

5. Working with 27k & 450k Data

  • How do I prepare, upload, and evaluate 27k / 450k data? (Multi-block data format)
  • How do I prepare, upload, and evaluate 27k / 450k data? (Multi-column (i.e. matrix) data format)

6. Genboree Commons

  • 6a. What is Genboree Commons?
  • 6b. How do I create a project in Genboree Commons?
  • 6c. How do I create a forum in Genboree Commons?
  • 6d. How do I change my email notification settings in Genboree Commons?

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