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Epigenome_Informatics_Workshop

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FAQ

1. Getting Started

  • How Do I Upload Files Onto The Workbench? Generic Example
  • How do I create a Group?
  • How do I create a new Genboree Project?
  • How do I create, edit, delete, and upload annotations / entry points to a Genboree Database?
  • What are Annotations?
  • What are Entry Points?
  • What is a Genome in Genboree?
  • What is an Entity List?
  • What is the LFF Annotation Format?

2. Using the Grid

  • How do I use the grid to create a List of Tracks? Assay Type vs Sample Type
  • How do I use the grid to create two Lists of Tracks? Individual vs. Individual

3. Track Operations

  • Converting BED files to Read Density Signal Tracks
  • How do I copy / move tracks from one database to another?

4. 27k & 450k

  • How do I prepare, upload, and evaluate 27k / 450k data? (Multi-block data format)
  • How do I prepare, upload, and evaluate 27k / 450k data? (Multi-column (i.e. matrix) data format)

5. Jobs

  • How do I check the status of jobs that I have submitted?

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