Projects

You have access to these projects within The Genboree Commons:

Project Description
actionability tutorials Wiki

This project is created to highlight functionalities provided by clingen actionability interface.

  Epigenome_Informatics_Workshop Wiki

This project contains sub-projects for each Epigenome Informatics Workshop starting in 2012.

6th Workshop - March 2013 ForumsWiki

This project contains information and documents related to the 6th Epigenome Informatics Workshop held in Houston in March 2013, and organized by the Bioinformatics Research Laboratory (BRL) at the Baylor College of Medicine. The workshop focused on using tools within the Genboree Workbench. The BRL wishes to acknowledge the NIH Epigenomics Roadmap Project for its generous support of this workshop....

ASHG Workshop - Oct 2013 Wiki

This project contains information and documents related to the American Society of Human Genetics (ASHG) Workshop held in Boston in October 2013. The workshop was organized by the Bioinformatics Research Laboratory (BRL) at the Baylor College of Medicine. The workshop, titled "Human Epigenome Atlas and Epigenomic Profile Analysis Using the Genboree Workbench" focused on analysis using various tools within the Genboree Workbench. The BRL wishes to acknowledge the NIH Epigenomics Roadmap Project for its generous support of this workshop. ...

Epigenomic Deconvolution Wiki

This page contains all the material associated with the publication named: "Epigenomic Deconvolution reveals association between stromal composition and metabolic phonotype of breast tumors".
You will find scripts and datasets associated with that publication in the Documents tab....

  exRNA Data Coordination Center Wiki

This project contains information about the Data Coordination Center(DCC) of the exRNA Communication Consortium.

This figure gives an overview of the DMRR infrastructure.
...

Genboree Microbiome Toolset ForumsWiki

The Genboree Microbiome Toolset provides an interactive environment for both novice and savvy users in which to conduct 16S rRNA microbiome analysis. The Toolset drives hypothesis generation by providing a wide range of analyses such as alpha diversity and beta diversity, phylogenetic profiles, supervised machine learning, and feature selection, via an intuitive and easy to use web-based GUI environment. The Toolset will continue to be upgraded and incorporated with additional third party tools in order to provide both analysis capabilities and computational resources to the microbiome research community....

Lab Notebook Onuchic ForumsWiki

Lab notes of Vitor Onuchic

  <Private Project>  You do not have access to this project, but you may have access to some sub-projects within.
Other Documents Wiki
Relevant Literature (Eugene) Wiki
Relevant Literature (Michael) Wiki
  Microbiome Workshops Wiki

A place for general information about the microbiome workshops as well as to hold specific sub-projects for each individual workshop.

March 2014 Wiki Two day Genboree Workbench Microbiome workshop:
  • Tuesday - March 11 - 2014
  • Tuesday - March 18 - 2014
Public ForumsWiki

This Public Genboree Commons Project contains information pertaining to the Genboree Commons and Genboree Workbench (getting started, Workbench icons, FAQs, etc.).

  <Private Project>  You do not have access to this project, but you may have access to some sub-projects within.
Amin V et al Nat Comm 2015 Wiki
  Transcriptome Toolset Wiki

This project contains tutorials, use cases, workshop materials for Transcriptome toolset in the Genboree workbench

exRNA Tools ForumsWiki

This project contains tutorial materials for the extracellular RNA data analysis tools available on Genboree.

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