Overview of All Data Submissions to the Data Coordination Center

This Wiki page includes information about the different datasets that have been submitted to the Data Coordination Center.
We include information about which datasets are fully deposited as well as datasets that are submitted and awaiting processing.

Fully Deposited Datasets

The datasets listed below have been fully deposited and are available in either the consortium-only Atlas or both the consortium-only Atlas and public Atlas.

PI Name Organization Study Title Samples Assay Consortium-Only or Public?
Bitzer, Markus University of Michigan Oct2015_ExRNA 80 Small RNA-seq Public
Das, Saumya Massachusetts General Hospital 2016_06_submission 43 Small RNA-seq Consortium-Only
Erle, David University of California-San Francisco Small RNA Profiles in Normal Human Biofluids 116 Small RNA-seq Consortium-Only
Franklin, Jeff Vanderbilt University School of Medicine RNAseq analysis of colorectal cancer cells: KRAS regulation of secreted RNAs. 18 Small RNA-seq Public
Freedman, Jane University of Massachusetts Medical School UH2 40 Samples Seq 39 Small RNA-seq Public
Galas, David Pacific Northwest Diabetes Research Institute The Complex Exogenous RNA Spectra in Human Plasma: An Interface with Human Gut Biota? 9 Small RNA-seq Public
Krichevsky, Anna Brigham and Women's Hospital AK-exosome RNA 4 Small RNA-seq Public
Jensen, Kendall Translational Genomics Research Institute aSAH Study from Jensen lab 523 Small RNA-seq Public
Jensen, Kendall Translational Genomics Research Institute Profiles of Extracellular miRNA in Cerebrospinal Fluid and Serum from Patients with Alzheimer's and Parkinson's Diseases Correlate with Disease Status and Features of Pathology 345 Small RNA-seq Public
Jensen, Kendall Translational Genomics Research Institute Oct2015_VolumeTest 11 Small RNA-seq Consortium-Only
Jensen, Kendall Translational Genomics Research Institute small RNA Sequencing of Biofluids from Healthy Controls 428 Small RNA-seq Public
Jensen, Kendall Translational Genomics Research Institute small RNA Sequencing of CSF Samples from Patients with IVH 70 Small RNA-seq Public
Laurent, Louise University of California-San Diego Nl_PlacDys_ExRNA1 48 Small RNA-seq Public
Patel, Tushar Mayo Clinic Human exRNA Sequencing Study 5 Small RNA-seq Public
Patel, Tushar Mayo Clinic Mouse Extracellular Small RNA Sequencing Study 3 Small RNA-seq Public
Patel, Tushar Mayo Clinic Plasma extracellular RNA profiles in healthy and cancer patients 192 Small RNA-seq Public
Saugstad, Julie Oregon Health and Sciences University TLDA miRNA Screen for Candidate AD Biomarkers in CSF from Living Donors 99 qPCR Public
Tewari, Muneesh University of Michigan ULMC Plasma and serum exRNA from healthy donors at U of M 197 Small RNA-seq Consortium-Only
Vickers, Kasey Vanderbilt University School of Medicine High-Density Lipoproteins - small RNA Signatures in Systemic Erythematosus Lupus. 6 Small RNA-seq Public
Weiner, Howard Brigham and Women's Hospital Search for Novel miRNA Serum Biomarkers in Multiple Sclerosis 193 qPCR Consortium-Only
Wong, David University of California-Los Angeles GC_ExRNA 198 Small RNA-seq Public

You can find this same list on the consortium-only Atlas (if you have access) and the public Atlas.

Submitted Datasets

The datasets listed below have been submitted but haven't been made available on the Atlas yet.
This could be due to a variety of reasons:
  • The manifest file, metadata archive, and/or data archive are being fixed
  • The submission is longRNA-seq (we haven't yet integrated the longRNA-seq version of exceRpt into our FTP data submission pipeline)
  • The submission has been processed but hasn't yet been deposited to our production server Atlas (still on our development server)
PI Name Organization Study Title Samples Assay
Ansel, Mark University of California-San Francisco Selective export of small RNAs into exosomes from activated T cells 12 Small RNA-seq
Bitzer, Markus University of Michigan To identify urinary RNA from biopsy associated urine as non-invasive biomarkers for kidney transplant patients 276 Small RNA-seq
Bitzer, Markus University of Michigan To identify urinary RNA from prospective urine as non-invasive biomarkers for kidney transplant patients 250 Small RNA-seq
Das, Saumya Massachusetts General Hospital Small RNA-seq during acute maximal exercise reveal RNAs involved in vascular inflammation and cardiometabolic health 62 Small RNA-seq
Erle, David University of California-San Francisco Small RNA Profiles in Normal Human Biofluids 24 Small RNA-seq
Jensen, Kendall Translational Genomics Research Institute Small RNA Sequencing of Biofluids from Parkinson's patients with dementia (PDD) 167 Small RNA-seq
Tuschl, Tom Rockefeller University ExRNA of healthy volunteers, individuals 1 - 12 312 Small RNA-seq
Wong, David University of California-Los Angeles GC_ExRNA (Long RNA-seq) 199 Long RNA-seq

Also available in: HTML TXT