Overview
- Introduction to the exRNA Atlas
- Selecting Profiles
- ncRNA Search Bar
- Faceted Charts
- Biosample Partition Grids
- Drill-down Sub-setting of Biosamples via Linear Tree
- Downloading Profile Data and Metadata from the exRNA Atlas
- Viewing exRNA Profiling Datasets
- Viewing Atlas Statistics
- Running Analyses and Viewing Analysis Results Using the exRNA Atlas
- Learn More About the exceRpt small RNA-seq Data Analysis Pipeline
Introduction to the exRNA Atlas¶
The exRNA Atlas is the data repository of the Extracellular RNA Communication Consortium (ERCC), which includes small RNA sequencing and qPCR-derived exRNA profiles from human and mouse biofluids.
All RNA-seq datasets are processed using version 4 of the exceRpt small RNA-seq pipeline and ERCC-developed quality metrics are uniformly applied to these datasets.
- a public version (accessible by everyone) and
- a private version (accessible only by ERC Consortium members).
- The private version of the Atlas stores additional exRNA profiles that are not yet available to the public.
- You must log into your Genboree account in order to access the private version of the Atlas.
- If you are a member of the ERC Consortium and are unable to log in to the private atlas, please contact the Data Coordination Center (brl-exrna@bcm.edu) for assistance.
If you are interested in submitting data to the Atlas, visit the Data & Metadata Processing Guide page to learn more about the submission process.
Selecting Profiles¶
ncRNA Search Bar¶
Faceted Charts¶
Viewing Selected Biosamples in Grid via Faceted Charts
Biosample Partition Grids¶
Viewing Biosamples in Biosample Partition Grid
Drill-down Sub-setting of Biosamples via Linear Tree¶
Viewing Selected Biosamples in Grid via Linear Tree
Downloading Profile Data and Metadata from the exRNA Atlas¶
Downloading Data and Metadata from the exRNA Atlas
Viewing exRNA Profiling Datasets¶
Viewing exRNA Profiling Datasets
Viewing Atlas Statistics¶
Running Analyses and Viewing Analysis Results Using the exRNA Atlas¶
Running Analyses and Viewing Analysis Results Using the exRNA Atlas
Learn More About the exceRpt small RNA-seq Data Analysis Pipeline¶
Genboree Tutorial for Using exceRpt