FAQ#510 Version5
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How many mismatches are allowed for mapping the reads against the human genome?
| Category: | smallRNA Pipeline | Difficluty: |  |
| Assigned to: | - | Due date: | |
| Related issue: | - | Related Message: | - |
| Related version: | - | Valid: | Valid |
Answer
The exceRpt pipeline allows anywhere from 0 to 3 endogenous mismatches.
You can find this option under the "Advanced Endogenous Alignment Options" section (you will have to maximize the section, as its contents are hidden by default).