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Transcriptome Toolset » exRNA Tools

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  • exceRpt Small RNA-seq
  • RSEQtools Long RNA-seq
  • Pathway and Interaction Analysis
  • DESeq2
  • Deconvolution
  • FAQ

FAQ

1. smallRNA Pipeline

  • Can I upload 3' adapter clipped input files?
  • How many mismatches are allowed for mapping the reads against the human genome?
  • How many reads should we have minimum to be able to cover low abundant targets with confidence in small RNA sequencing from plasma samples?
  • What are the sources of the various small RNA libraries used in this pipeline?
  • What are the various output files generated by the pipeline?
  • What type of input files can be used for running the exceRpt Small RNA-seq pipeline?

2. Long RNASeq Pipeline

  • What type of input files can be used for running the long RNA-seq pipeline?

3. Genboree Workbench

  • Once I upload my files into the Genboree Workbench, are they public or not by default? Do I need to do something to make them unpublic?

4. Network and Pathway Analysis

  • What types of pathways and biological processes are my exRNA of interest involved in?
  • Which proteins are targeted by my exRNA of interest?

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