FAQ#500 Version7
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What type of input files can be used for running the exceRpt Small RNA-seq pipeline?
| Category: | smallRNA Pipeline | Difficluty: |  |
| Assigned to: | - | Due date: | |
| Related issue: | - | Related Message: | - |
| Related version: | - | Valid: | Valid |
Answer
This pipeline takes one or more single end FASTQ or "SRA" input file(s).
The input file(s) can be compressed.
Any SRA file will be converted to FASTQ by the pipeline for further processing.
You can upload multiple archives, each containing any number of samples, to the Genboree Workbench to launch a single job.