Metagenomics Publications

mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities

Ma J, Coarfa C, Qin X, Bonnen PE, Milosavljevic A, Versalovic J, Aagaard K.

BMC Genomics. 2014 Apr 3;15:257. doi: 10.1186/1471-2164-15-257.

PMID: 24694284

Nasopharyngeal Proteobacteria are associated with viral etiology and acute wheezing in children with severe bronchiolitis

Hyde ER, Petrosino JF, Piedra PA, Camargo CA, Espinola JA, Mansbach JM.

J Allergy Clin Immunol. 2014 Apr;133(4):1220-2. doi: 10.1016/j.jaci.2013.10.049. Epub 2013 Dec 22.

PMID: 24365140

Microbiota modulate behavorial and physiological abnormalities associated with neurodevelopmental disorders

Hsiao EY, McBride SW, Sharon G, Hyde ER, McCue T, Codelli JA, Chow J, Reisman SE, Petrosino JF, Patterson PH, Mazamanian SK.

Cell. 2013 Dec 19;155(7):1451-63. doi: 10.1016/j.cell.2013.11.024. Epub 2013 Dec 5.

PMID: 24315484

Cellulose supplementation early in life ameliorates colitis in adult mice

Nagy-Szakal D, Hollister EB, Luna RA, Sziget R, Tatevian N, smith CW, Versalovic J, Kellermayer R.

PLoS One. 2013;8(2):e56685. doi: 10.1371/journal.pone.0056685. Epub 2013 Feb 20.

PMID: 23437211

Host response to probiotics determined by nutritional status of rotavirus-infected neonatal mice

Preidis GA, Saulnier DM, Blutt SE, Mistretta TA, Riehle KP, Major AM, Venable SF, Barrish JP, Finegold MJ, Petrosino JF, Guerrant RL, Conner ME, Versalovic J.

J Pediatr Gastroenterol Nutr. 2012 Sep;55(3):299-307.

PMID: 22343914

A framework for human microbiome research

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209.

PMID: 22699610

Structure, function and diversity of the healthy human microbiome

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):207-14. doi: 10.1038/nature11234.

PMID: 22699609

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences

Riehle K, Coarfa C, Jackson A, Ma J, Tandon A, Paithankar S, Raghuraman S, Mistretta TA, Saulnier D, Raza S, Diaz MA, Shulman R, Aagaard K, Versalovic J, Milosavljevic A.

BMC Bioinformatics. 2012;13 Suppl 13:S11. doi: 10.1186/1471-2105-13-S13-S11. Epub 2012 Aug 24.

PMID: 23320832

Probiotics stimulate enterocyte migration and microbial diversity in the neonatal mouse intestine

Preidis GA, Saulnier DM, Blutt SE, Mistretta TA, Riehle KP, Major AM, Venable SF, Finegold MJ, Petrosino JF, Conner ME, Versalovic J.

FASEB J. 2012 May;26(5):1960-9. doi: 10.1096/fj.10-177980. Epub 2012 Jan 20.

PMID: 22267340

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy

Aagaard K, Riehle K, Ma J, Segata N, Mistretta TA, Coarfa C, Raza S, Rosenbaum S, Van den Veyver I, Milosavljevic A, Gevers D, Huttenhower C, Petrosino J, Versalovic J.

PLoS One. 2012;7(6):e36466. doi: 10.1371/journal.pone.0036466. Epub 2012 Jun 13.

PMID: 22719832

Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome

Saulnier DM, Riehle K, Mistretta TA, Diaz MA, Mandal D, Raza S, Weidler EM, Qin X, Coarfa C, Milosavljevic A, Petrosino JF, Highlander S, Gibbs R, Lynch SV, Shulman RJ, Versalovic J.

Gastroenterology. 2011 Nov;141(5):1782-91. doi: 10.1053/j.gastro.2011.06.072. Epub 2011 Jul 8.

PMID: 21741921