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  • Actionabilty APIs

Actionabilty APIs · Changes

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Update Actionabilty APIs authored Mar 28, 2023 by Neethu Shah's avatar Neethu Shah
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Actionabilty-APIs.md
View page @ e7980ec5
......@@ -3,55 +3,13 @@ Summary of actionability APIs:
- Production service URL - <https://actionability.clinicalgenome.org/ac>
- Stage service URL - <https://actionability.test.genome.network/ac>
- Test BRL local - <https://genboree.org/ac>
<table>
<tr>
<th>Endpoints</th>
<th>Description</th>
<th>Examples</th>
</tr>
<tr>
<td>/api/summ/brief</td>
<td>Summary of curation topics, including both the contexts - adult and pediatric</td>
<td>
</td>
</tr>
<tr>
<td>/{contextId}/api/summ/scoring</td>
<td>Summary of context specific scores</td>
<td>
<https://actionability.clinicalgenome.org/ac>
[Adult/api/summ/scoring](https://actionability.clinicalgenome.org/acAdult/api/summ/scoring "https://actionability.clinicalgenome.org/acAdult/api/summ/scoring")\
<https://actionability.clinicalgenome.org/ac/Pediatric/api/summ/scoring>
</td>
</tr>
<tr>
<td>/{contextId}/api/summ</td>
<td>Summary of overall scores - context specific</td>
<td>
<https://actionability.clinicalgenome.org/ac/Adult/ui/summ>
</td>
</tr>
<tr>
<td>/Adult/ui/summ/scoring</td>
<td>Summary of individual and consensus scores</td>
<td>
<https://actionability.clinicalgenome.org/ac/Adult/ui/summ/scoring>
</td>
</tr>
<tr>
<td>api/summ/brief/$/columns?flavor=flat</td>
<td>Lists the columns for the brief api endpoint</td>
<td>
</td>
</tr>
</table>
| Endpoints | Description | Examples |
|-----------|-------------|----------|
| /api/summ/brief | Summary of curation topics, including both the contexts - adult and pediatric | |
| /{contextId}/api/summ/scoring | Summary of context specific scores | |
| /{contextId}/api/summ | Summary of overall scores - context specific | |
| /Adult/ui/summ/scoring | Summary of individual and consensus scores | |
| api/summ/brief/$/columns?flavor=flat | Lists the columns for the brief api endpoint | |
#### Variant Condition Framework Test Data
......@@ -150,8 +108,8 @@ Summary of changes
5. /Adult/api/summ?format=tsv [ACI-summ-adult-TueMar2805421805002023.tsv](uploads/918a4e4add6c3ee5e5b3cd599d53d78b/ACI-summ-adult-TueMar2805421805002023.tsv)
6. /Pediatric/api/summ?format=tsv [ACI-summ-pediatric-TueMar2806220705002023.tsv](uploads/b791f4c364a5238e1db9bea25c177ffc/ACI-summ-pediatric-TueMar2806220705002023.tsv)
#### Individual Scores Summary
- /Adult/api/summ/scoring?excludeNotScored=true [scoring_nested_adult.json](uploads/e3835b0ce9e738d6d6efab673d7fea9c/scoring_nested_adult.json)
- /Pediatric/api/summ/scoring?excludeNotScored=true [scoring_nested_pediatric.json](uploads/145563b4417e1cb68cd94bcab6f0ebb5/scoring_nested_pediatric.json)
- /Adult/api/summ/scoring?flavor=flat&excludeNotScored=true [scoring_flat_adult.json](uploads/15e578abeccd36e3d8d876b8c5965179/scoring_flat_adult.json)
......@@ -166,7 +124,7 @@ Summary of changes
- /Adult/api/summ/assertion?flavor=flat [assertion_flat_adult.json](uploads/46ae52ce21676a3cc65d927b38e52909/assertion_flat_adult.json)
- /Pediatric/api/summ/assertion?flavor=flat
- /Adult/api/summ/assertion?format=tsv [ACI-assertion-adult-TueMar2806005905002023.tsv](uploads/fef214a64d91dfdfb60c24a7f2625f53/ACI-assertion-adult-TueMar2806005905002023.tsv)
- /Pediatric/api/summ/assertion?format=tsv
- /Pediatric/api/summ/assertion?format=tsv
#### All Assertions Summary
......@@ -175,4 +133,4 @@ Summary of changes
- /Adult/api/summ/assertion?flavor=flat&assertionType=all [assertion_all_flat_adult.json](uploads/384fb28cbb75049a97fd28b1d0435bf2/assertion_all_flat_adult.json)
- /Pediatric/api/summ/assertion?flavor=flat&assertionType=all
- /Adult/api/summ/assertion?format=tsv&assertionType=all [ACI-assertion-all-adult-TueMar2806094005002023.tsv](uploads/4c067b709541ce28633b9f22d23b16ba/ACI-assertion-all-adult-TueMar2806094005002023.tsv)
- /Pediatric/api/summ/assertion?format=tsv&assertionType=all
\ No newline at end of file
- /Pediatric/api/summ/assertion?format=tsv&assertionType=all
\ No newline at end of file
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