| ... | ... | @@ -55,10 +55,65 @@ Summary of actionability APIs: |
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#### Variant Condition Framework Test Data
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Summary of changes
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* Nested\
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For all the nested payloads a new attribute curationType is defined with the possible values - Gene-Condition or Variant Condition. Topics that are Variant-Condition oriented will have variants object instead of genes. Check an example from the API route /Adult/api/summ/oi
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```
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"variants": [
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{
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"id": "CA012732",
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"descriptor": [
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"NC_000014.9:g.23424840G>A"
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],
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"description": "Other test",
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"variantType": "Other",
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"diseases": [
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{
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"label": "GAUCHER DISEASE, TYPE I",
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"omim": "230800",
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"preferredMondo": "0016297"
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}
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]
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}
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]
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```
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Scoring group membership will also have variant attributes instead of gene attributes for a Variant-Condition topic.
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```
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"scoringGroups": [
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{
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"label": "GroupA",
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"geneDiseaseMembers": [
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{
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"preferredMondo": "0016297",
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"variantId": "CA012732",
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"description": "Other test",
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"vuuid": "8a5cf04f-a070-581e-a119-df60482bc690",
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"disOmim": "230800",
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"descriptor": [
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"NC_000014.9:g.23424840G>A"
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]
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}
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]
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```
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* Flat & format = json/tsv
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There is a new column in all the api response payloads - curationType. Possible values for this column - Gene-Condition OR Variant Condition.
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Note an example for the route - /Adult/api/summ/oi?flavor=flat
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```
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"columns": [ "docId", "iri", "curationType", "latestSearchDate", "lastUpdated", "context", "contextIri", "release", "releaseDate", "genes-scoringGroup", "disease", "status-overall", "status-stg1", "status-stg2", "status-scoring", "outcome", "intervention", "final-severity", "final-likelihood", "final-natureOfIntervention", "final-effectiveness", "final-overall" ]
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```
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* Flat & format = tsv
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1. /api/summ/brief [brief_nested.json](uploads/3d99993dc253d7b10955a919e5dedf7f/brief_nested.json)
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2. /api/summ/brief?flavor=flat [brief_flat.json](uploads/3292b2b69f63e2dc42dbda741b235dbc/brief_flat.json)
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3. api/summ/brief?format=tsv [ACI-brief-TueMar2805000505002023.tsv](uploads/6d3061608a2751ddd014c660392fa6cb/ACI-brief-TueMar2805000505002023.tsv)
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4. /Adult/api/summ/oi [oi_nested_adult.json](uploads/ca263999b9ad367bac79779ce684256f/oi_nested_adult.json)
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3. /api/summ/brief?format=tsv [ACI-brief-TueMar2805000505002023.tsv](uploads/6d3061608a2751ddd014c660392fa6cb/ACI-brief-TueMar2805000505002023.tsv)
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4. /Adult/api/summ/oi [oi_nested_adult.json](uploads/ca263999b9ad367bac79779ce684256f/oi_nested_adult.json)
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5. /Pediatric/api/summ/oi
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6. /Adult/api/summ/oi?flavor=flat
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7. /Pediatric/api/summ/oi?flavor=flat |
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\ No newline at end of file |
