Cfde_genereg_ldh_logo
Evidence (information) and Assertion (knowledge) for Regulatory relationship between Variants, Regulatory Elements, and Genes

The CFDE Gene Regulation Linked Data Hub (CFDE GeneReg LDH) data store leverages the reusable and extensible LDH API microservice codebase employed by the Milosavljevic lab to support select efforts.
 
( This UI is merely a wrapper around that API and was readily available via configuration settings due to reusability practices. Be advised that it should not be construed as an end user UI for a tailored CFDE Gene interaction experience. Furthermore, the current data model and content covers a test-case/proof-of-concept. ) Learn more

Explore the CFDE Gene Regulation Linked Data Hub
Lookup using identifiers
Select entity type from the dropdown and lookup using multiple generic identifiers for the selected entity type. Examples are provided.
(Try: )
CFDE GeneReg LDH Stats
Entity Type Count
Allele Specific Evidence 10,305,802
Context 10
Defined Subpopulation Allele Frequency Evidence 0
Encode Regulatory Element Evidence 654,643,454
Gene 18,701
Genomic Region Functional Effect Evidence Line 0
Genomic Region Functional Effect Knowledge 0
Mixed Population Allele Frequency Evidence 0
Publication 0
Rbp Regulatory Evidence 937,116
Regulatory Element 1,913,866
Variant 239,838,256
Variant Functional Effect Evidence Line 0
Variant Functional Effect Knowledge 0
Xqtl Evidence 8,454,212
Total 916111417
Latest News
V0.1.0 NEW-FEATURE: Publicly Exposed CFDE Gene Test-Case UI (API wrapper) (2022-03-24)
V0.1.5 NEW-FEATURE: Updated Content CFDE Gene Test-Case UI (API wrapper) (2022-03-28)
Model
Cfde_gene_testcase_model

  • This test-case / proof-of-concept loaded CFDE Gene content into a dedicated LDH based microservice.

  • The data model used to persist the content was simplified and not reflective of the planned data model, which is being finalized.

  • Note: modeling the persistent store is largely a low-level and behind-the-scenes engineering activity which considers the hybrid database being used and LDH concepts for employing it.

CFDE Gene Content
Fdr_access

  • To learn more about CFDE GeneReg LDH content and how to access them, visit the Content and Access page.