cellTypeSpecificRegionsTargetedBisulfiteSequencing.txt

Onuchic, Vitor, 07/06/2016 05:34 pm

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1
chr1.3606896.3607244.CELL.BMC.TP73
2
chr1.6475094.6475491.CELL.BSC.HES2
3
chr1.9211494.9211918.MIR.CELL.miR-34a
4
chr1.153519614.153520003.CELL.BSC.S100A3
5
chr1.155290505.155290791.CELL.BLEC.RUSC1
6
chr1.155290686.155291026.CELL.BLEC.RUSC1
7
chr1.156123167.156123561.CELL.BSC.SEMA4A
8
chr1.156810476.156810842.CELL.BSC.INSRR
9
chr1.172113480.172113857.MIR.CELL.miRNA99A2
10
chr1.183154924.183155362.CELL.BSC.LAMC2
11
chr1.201252416.201252689.CELL.TCELL.PKP1
12
chr1.201252592.201252972.CELL.TCELL.PKP1
13
chr1.205350335.205350700.CELL.BLEC.LEMD1
14
chr1.209605281.209605706.MIR.CELL.miR-205
15
chr1.227918685.227919080.CELL.BMC.JMJD4
16
chr2.11679897.11680290.CELL.BSC.GREB1
17
chr2.11886558.11886982.CELL.BMC.LPIN1
18
chr2.27301219.27301647.CELL.BLEC.EMILIN1
19
chr2.27371784.27372183.CELL.BLEC.TCF23
20
chr2.45232135.45232533.CELL.BSC.SIX2
21
chr2.74119881.74120270.CELL.BMC.ACTG2
22
chr2.106681848.106682296.CELL.BMC.C2orf40
23
chr2.177015887.177016316.CELL.BSC.HOXD4
24
chr2.177028623.177028986.CELL.BSC.HOXD3
25
chr3.45123590.45123949.CELL.BSC.CDCP1
26
chr4.1987920.1988337.MIR.CELL.miR-943
27
chr4.2939496.2939856.CELL.BMC.NOP14
28
chr5.67522274.67522641.CELL.BMC.PIK3R1
29
chr5.133451428.133451778.CELL.BMC.TCF7
30
chr5.140011133.140011408.CELL.BSC.CD14
31
chr5.140011211.140011572.CELL.BSC.CD14
32
chr5.154092291.154092644.CELL.BLEC.LARP1
33
chr5.169532862.169533235.CELL.BSC.FOXI1
34
chr5.175976150.175976537.CELL.BMC.PCDH24
35
chr5.176826739.176827078.CELL.BLEC.PFN3
36
chr5.176826993.176827413.CELL.BLEC.PFN3
37
chr5.179224405.179224833.CELL.BMC.MGAT4B
38
chr6.27106913.27107277.CELL.BLEC.HIST1H4I
39
chr6.34206364.34206775.CELL.BSC.HMGA1
40
chr6.151560845.151561191.CELL.BSC.AKAP12
41
chr6.151561077.151561412.CELL.BSC.AKAP12
42
chr7.536699.537094.CELL.BMC.PDGFA
43
chr7.2557320.2557759.CELL.BLEC.LFNG
44
chr7.4169068.4169381.CELL.BMC.SDK1
45
chr7.4169174.4169447.CELL.BMC.SDK1
46
chr7.4169405.4169785.CELL.BMC.SDK1
47
chr7.27150095.27150469.CELL.TCELL.HOXA3
48
chr7.27184934.27185309.CELL.BSC.HOXA6
49
chr7.30951298.30951570.CELL.BMC.AQP1
50
chr7.30951501.30951798.CELL.BMC.AQP1
51
chr7.99690957.99691355.MIR.CELL.miR-25
52
chr7.114054835.114055236.CELL.BMC.FOXP2
53
chr7.116593721.116594159.CELL.TCELL.ST7
54
chr7.116594066.116594365.CELL.TCELL.ST7
55
chr7.150935335.150935740.MIR.CELL.miR-671
56
chr8.22437767.22438187.CELL.BSC.PDLIM2
57
chr8.40010786.40011233.CELL.BMC.C8orf4
58
chr8.42128666.42129008.CELL.TCELL.IKBKB
59
chr8.42128828.42129184.CELL.TCELL.IKBKB
60
chr8.102380896.102381304.CELL.BLEC.NACAP1
61
chr8.143761657.143762048.CELL.BLEC.PSCA
62
chr8.144872916.144873277.CELL.BMC.SCRIB
63
chr8.145105832.145106117.CELL.BMC.OPLAH
64
chr8.145106010.145106380.CELL.BMC.OPLAH
65
chr9.97848119.97848552.MIR.CELL.miR-24NA
66
chr9.102583786.102584216.CELL.TCELL.NR4A3
67
chr9.102583999.102584357.CELL.TCELL.NR4A3
68
chr9.116356019.116356410.CELL.BLEC.RGS3
69
chr9.139388708.139389076.CELL.BMC.NOTCH1
70
chr9.139871781.139872151.CELL.BLEC.PTGDS
71
chr10.73471287.73471661.CELL.BMC.C10orf105
72
chr10.95848580.95849003.CELL.BMC.PLCE1
73
chr10.102820800.102821200.CELL.BLEC.KAZALD1
74
chr11.6339998.6340357.CELL.BLEC.PRKCDBP
75
chr11.13983723.13984039.CELL.BMC.SPON1
76
chr11.13983963.13984202.CELL.BMC.SPON1
77
chr11.17757319.17757696.CELL.BLEC.KCNC1
78
chr11.20177523.20177965.CELL.BSC.DBX1
79
chr11.44331367.44331792.CELL.TCELL.ALX4
80
chr11.47376667.47377026.CELL.TCELL.SPI1
81
chr11.47376832.47377073.CELL.TCELL.SPI1
82
chr11.47377000.47377382.CELL.TCELL.SPI1
83
chr11.67259049.67259438.CELL.BMC.PITPNM1
84
chr11.67758467.67758883.CELL.BLEC.UNC93B1
85
chr11.70508260.70508636.CELL.TCELL.SHANK2
86
chr11.73357038.73357427.CELL.BSC.PLEKHB1
87
chr11.117069790.117070211.CELL.BLEC.TAGLN
88
chr11.130274642.130275003.CELL.BMC.ADAMTS8
89
chr12.6493046.6493491.CELL.TCELL.LTBR
90
chr12.7072672.7073068.MIR.CELL.miR-200c
91
chr12.31079614.31080023.CELL.BLEC.TSPAN11
92
chr12.120532624.120533069.CELL.BMC.RAB35
93
chr13.24736380.24736817.MIR.CELL.miR-2276
94
chr13.76334594.76334980.CELL.BSC.LMO7
95
chr14.24457837.24458189.CELL.BSC.DHRS4L2
96
chr14.24458056.24458327.CELL.BSC.DHRS4L2
97
chr14.69726511.69726906.CELL.BSC.GALNTL1
98
chr14.75988604.75988959.CELL.BLEC.BATF
99
chr14.105953067.105953446.CELL.BSC.CRIP1
100
chr15.62939314.62939731.CELL.BLEC.TLN2
101
chr15.67430178.67430572.CELL.BLEC.SMAD3
102
chr15.74218675.74219089.CELL.TCELL.LOXL1
103
chr16.810965.811372.CELL.BMC.MSLN
104
chr16.3062274.3062632.CELL.BSC.CLDN9
105
chr16.14402949.14403354.MIR.CELL.miR-365NA
106
chr16.55542622.55542916.CELL.BMC.LPCAT2
107
chr16.55542864.55543303.CELL.BMC.LPCAT2
108
chr16.57673022.57673382.CELL.BLEC.GPR56
109
chr16.67197102.67197462.CELL.BMC.HSF4
110
chr16.86612065.86612494.CELL.BSC.FOXL1
111
chr17.1959278.1959584.CELL.BSC.HIC1
112
chr17.1959511.1959779.CELL.BSC.HIC1
113
chr17.7571538.7571904.CELL.BMC.TP53
114
chr17.27941547.27941958.CELL.BMC.CORO6
115
chr17.38024262.38024677.CELL.TCELL.ZPBP2
116
chr17.38175149.38175546.CELL.BLEC.MED24
117
chr17.38334013.38334431.CELL.BMC.RAPGEFL1
118
chr17.38709849.38710218.CELL.BLEC.CCR7
119
chr17.47481244.47481615.CELL.BLEC.PHB
120
chr17.56401959.56402390.MIR.CELL.miRNA42
121
chr17.72766505.72766899.CELL.BLEC.NAT9
122
chr17.75471136.75471566.CELL.BLEC.4-Sep
123
chr17.79800824.79801218.CELL.BMC.P4HB
124
chr18.21452768.21453179.CELL.BMC.LAMA3
125
chr18.55862444.55862821.CELL.BSC.NEDD4L
126
chr18.55888587.55888957.CELL.BSC.NEDD4L
127
chr19.543539.543958.CELL.TCELL.GZMM
128
chr19.543885.544197.CELL.TCELL.GZMM
129
chr19.4090131.4090498.CELL.BMC.MAP2K2
130
chr19.8591466.8591851.CELL.TCELL.MYO1F
131
chr19.10927905.10928351.MIR.CELL.miRNA99A1
132
chr19.35629536.35629905.CELL.BLEC.FXYD1
133
chr19.35630131.35630561.CELL.BLEC.FXYD1
134
chr19.35633882.35634226.CELL.BSC.FXYD7
135
chr19.35634105.35634458.CELL.BSC.FXYD7
136
chr19.41281123.41281475.CELL.BMC.MIA
137
chr19.49055231.49055602.CELL.BSC.SULT2B1
138
chr20.62573811.62574176.MIR.CELL.miR-647
139
chr21.44473107.44473495.CELL.BMC.CBS
140
chr22.18463462.18463821.MIR.CELL.miR-648
141
chr22.22273602.22274051.CELL.BMC.PPM1F
142
chr22.24176495.24176863.CELL.BMC.DERL3
143
chr22.24979529.24979896.CELL.BSC.GGT1
144
chr22.36677143.36677389.CELL.BLEC.MYH9
145
chr22.36677257.36677608.CELL.BLEC.MYH9
146
chr22.37966076.37966431.CELL.BLEC.LGALS2
147
chr22.47022365.47022689.CELL.BMC.GRAMD4
148
chr22.47022597.47022864.CELL.BMC.GRAMD4
149
chr22.51017188.51017569.CELL.BSC.CHKB