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Update Markdown and Citations authored by Neethu Shah's avatar Neethu Shah
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Markdown-and-Citations.md
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...@@ -116,6 +116,92 @@ Given below is an example of a criteria code specification text that has all the ...@@ -116,6 +116,92 @@ Given below is an example of a criteria code specification text that has all the
> } > }
> }` > }`
2. `[<sup>1</sup>](#pmid_28825729)`
> uses the `pmid` namespace with the `id` 28825729. This citation value can be obtained from the first(zero index) reference in the list `entContent.references`
> GET - `https://genboree.org/cspec/CriteriaCode/id/1526042290?fields=ldFor.RuleSet[0].entContent.references[0]`
> PAYLOAD -
> `{
> "data": {
> "ldFor": {
> "RuleSet": [
> {
> "entContent": {
> "references": [
> {
> "auths": [
> "Gadd S",
> "Huff V",
> "et al."
> ],
> "doiStr": "10.1038/ng.3940",
> "id": "28825729",
> "iss": "(10)",
> "namespace": "pmid",
> "pages": "p. 1487-1494.",
> "source": "Nat Genet",
> "title": "A Children's Oncology Group and TARGET initiative exploring the genetic landscape of Wilms tumor.",
> "vol": "49",
> "year": "2017"
> }
> ]
> }
> }
> ]
> }
> },
> "metadata": {
> "rendered": {
> "by": "https://genboree.org/cspec/srvc",
> "when": "2022-08-30T21:25:35.623Z"
> }
> },
> "status": {
> "code": 200,
> "name": "OK"
> }
> }`
3. `[<sup>5</sup>](#footnote_29e729be-5b0f-5d41-aee6-519557b48868)`
> uses the `footnote` namespace with the `id` 29e729be-5b0f-5d41-aee6-519557b48868. This citation value can be obtained from the fifth(fourth index) reference in the list `entContent.references`
> GET - `https://genboree.org/cspec/CriteriaCode/id/1526042290?fields=ldFor.RuleSet[0].entContent.references[4]`
PAYLOAD - `{
> "data": {
> "ldFor": {
> "RuleSet": [
> {
> "entContent": {
> "references": [
> null,
> null,
> null,
> null,
> {
> "id": "29e729be-5b0f-5d41-aee6-519557b48868",
> "namespace": "footnote",
> "value": "introns are removed from the pre-mRNA by the spliceosome and exons are spliced back together"
> }
> ]
> }
> }
> ]
> }
> },
> "metadata": {
> "rendered": {
> "by": "https://genboree.org/cspec/srvc",
> "when": "2022-08-30T21:31:10.219Z"
> }
> },
> "status": {
> "code": 200,
> "name": "OK"
> }
> }`
#### Legacy specification documents. #### Legacy specification documents.
As per the ClinGen Variant Curation Working Group recommendation a VCEP should be able to maintain and version specifications for a single gene separately. All specifications that are applicable for multiple genes are to be re-released into separate SVI documents. As per the ClinGen Variant Curation Working Group recommendation a VCEP should be able to maintain and version specifications for a single gene separately. All specifications that are applicable for multiple genes are to be re-released into separate SVI documents.
......