API.md

@@ -23,30 +23,29 @@ Assertion API endpoint for computing variant pathogenicity given a set of eviden
 >    }
 >  }
 > ```
+> Example of how the route works:
 
-A.4) Example of how the route works:
-
-```plaintext
-const SimpleJsonReq = require( "@brl/brl-gb/client/simple/simpleJsonReq" ).SimpleJsonReq
-let baseUrl = "https://cspec.genome.network/cspec/eng/svi"
-let clientOpts = { timeout: 600000 }
-let jsClient = undefined
-let resp = undefined
-jsClient = new SimpleJsonReq( baseUrl, clientOpts )
-let reqConfig = {
-  serverCertCheck : false, 
-  data: payload
-}
-resp = await jsClient.doGet('/assertion', reqConfig)
-> global.brl.dot.pick('data', resp.data)
-{ comment:
-   'Two assertions: Pathogenic and Likely Pathogenic were made. In such case the final call is the highest strength call, hence the allele is Pathogenic',
-  finalCall: 'Pathogenic',
-  rules:
-   [ { conditions: [Array], inference: 'Pathogenic', rule: 'Rule1' },
-     { conditions: [Array], inference: 'Pathogenic', rule: 'Rule2' },
-     { conditions: [Array],
-       inference: 'Likely Pathogenic',
-       rule: 'Rule20' } ],
-  statusObj: { name: 'assertion computed', status: 'ok' } }
-```
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+> ```plaintext
+> const SimpleJsonReq = require( "@brl/brl-gb/client/simple/simpleJsonReq" ).SimpleJsonReq
+> let baseUrl = "https://cspec.genome.network/cspec/eng/svi"
+> let clientOpts = { timeout: 600000 }
+> let jsClient = undefined
+> let resp = undefined
+> jsClient = new SimpleJsonReq( baseUrl, clientOpts )
+> let reqConfig = {
+>   serverCertCheck : false, 
+>   data: payload
+> }
+> resp = await jsClient.doGet('/assertion', reqConfig)
+global.brl.dot.pick('data', resp.data)
+> { comment:
+>    'Two assertions: Pathogenic and Likely Pathogenic were made. In such case the final call is the highest strength call, hence the allele is Pathogenic',
+>   finalCall: 'Pathogenic',
+>   rules:
+>    [ { conditions: [Array], inference: 'Pathogenic', rule: 'Rule1' },
+>      { conditions: [Array], inference: 'Pathogenic', rule: 'Rule2' },
+>      { conditions: [Array],
+>        inference: 'Likely Pathogenic',
+>        rule: 'Rule20' } ],
+>   statusObj: { name: 'assertion computed', status: 'ok' } }
+> ```
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