... | @@ -37,15 +37,104 @@ let reqConfig = { |
... | @@ -37,15 +37,104 @@ let reqConfig = { |
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data: payload
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data: payload
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}
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}
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resp = await jsClient.doGet('/assertion', reqConfig)
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resp = await jsClient.doGet('/assertion', reqConfig)
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> global.brl.dot.pick('data', resp.data)
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> console.log(global.brl.insp(global.brl.dot.pick('data', resp.data)))
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{ comment:
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{
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'Two assertions: Pathogenic and Likely Pathogenic were made. In such case the final call is the highest strength call, hence the allele is Pathogenic',
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comment: 'Two assertions: Pathogenic and Likely Pathogenic were made. In such case ' +
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'the final call is the highest strength call, hence the allele is ' +
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'Pathogenic',
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finalCall: 'Pathogenic',
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finalCall: 'Pathogenic',
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rules:
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rules: [
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[ { conditions: [Array], inference: 'Pathogenic', rule: 'Rule1' },
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{
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{ conditions: [Array], inference: 'Pathogenic', rule: 'Rule2' },
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conditions: [
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{ conditions: [Array],
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{
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applicableCriteriaCodes: [
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'PVS1',
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'PS2_Very Strong'
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],
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condition: '==1',
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label: 'Rule1, Condition1',
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partitionPath: 'Pathogenic.Very Strong'
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},
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{
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applicableCriteriaCodes: [
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'PS1',
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'PS2',
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'PS3',
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'PS4',
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'PP1_Strong'
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],
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condition: '>=1',
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label: 'Rule1, Condition2',
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partitionPath: 'Pathogenic.Strong'
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}
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],
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inference: 'Pathogenic',
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rule: 'Rule1'
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},
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{
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conditions: [
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{
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applicableCriteriaCodes: [
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'PVS1',
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'PS2_Very Strong'
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],
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condition: '==1',
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label: 'Rule2, Condition1',
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partitionPath: 'Pathogenic.Very Strong'
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},
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{
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applicableCriteriaCodes: [
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'PS2_Moderate',
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'PS3_Moderate',
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'PS4_Moderate',
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'PM1',
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'PM4',
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'PM5',
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'PP1_Moderate'
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],
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condition: '>=2',
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label: 'Rule2, Condition2',
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partitionPath: 'Pathogenic.Moderate'
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}
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],
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inference: 'Pathogenic',
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rule: 'Rule2'
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},
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{
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conditions: [
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{
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applicableCriteriaCodes: [
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'PS1',
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'PS2',
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'PS3',
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'PS4',
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'PP1_Strong'
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],
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condition: '==1',
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label: 'Rule20, Condition1',
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partitionPath: 'Pathogenic.Strong'
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},
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{
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applicableCriteriaCodes: [
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'PS2_Moderate',
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'PS3_Moderate',
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'PS4_Moderate',
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'PM1',
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'PM4',
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'PM5',
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'PP1_Moderate'
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],
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condition: '==2',
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label: 'Rule20, Condition2',
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partitionPath: 'Pathogenic.Moderate'
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}
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],
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inference: 'Likely Pathogenic',
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inference: 'Likely Pathogenic',
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rule: 'Rule20' } ],
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rule: 'Rule20'
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statusObj: { name: 'assertion computed', status: 'ok' } }
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}
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``` |
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],
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\ No newline at end of file |
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statusObj: {
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name: 'assertion computed',
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status: 'ok'
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}
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} |
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\ No newline at end of file |