API.md

@@ -37,15 +37,104 @@ let reqConfig = {
   data: payload
 }
 resp = await jsClient.doGet('/assertion', reqConfig)
-> global.brl.dot.pick('data', resp.data)
-{ comment:
-   'Two assertions: Pathogenic and Likely Pathogenic were made. In such case the final call is the highest strength call, hence the allele is Pathogenic',
+> console.log(global.brl.insp(global.brl.dot.pick('data', resp.data)))
+{
+  comment: 'Two assertions: Pathogenic and Likely Pathogenic were made. In such case ' +
+    'the final call is the highest strength call, hence the allele is ' +
+    'Pathogenic',
   finalCall: 'Pathogenic',
-  rules:
-   [ { conditions: [Array], inference: 'Pathogenic', rule: 'Rule1' },
-     { conditions: [Array], inference: 'Pathogenic', rule: 'Rule2' },
-     { conditions: [Array],
-       inference: 'Likely Pathogenic',
-       rule: 'Rule20' } ],
-  statusObj: { name: 'assertion computed', status: 'ok' } }
-```
\ No newline at end of file
+  rules: [
+    {
+      conditions: [
+        {
+          applicableCriteriaCodes: [
+            'PVS1',
+            'PS2_Very Strong'
+          ],
+          condition: '==1',
+          label: 'Rule1, Condition1',
+          partitionPath: 'Pathogenic.Very Strong'
+        },
+        {
+          applicableCriteriaCodes: [
+            'PS1',
+            'PS2',
+            'PS3',
+            'PS4',
+            'PP1_Strong'
+          ],
+          condition: '>=1',
+          label: 'Rule1, Condition2',
+          partitionPath: 'Pathogenic.Strong'
+        }
+      ],
+      inference: 'Pathogenic',
+      rule: 'Rule1'
+    },
+    {
+      conditions: [
+        {
+          applicableCriteriaCodes: [
+            'PVS1',
+            'PS2_Very Strong'
+          ],
+          condition: '==1',
+          label: 'Rule2, Condition1',
+          partitionPath: 'Pathogenic.Very Strong'
+        },
+        {
+          applicableCriteriaCodes: [
+            'PS2_Moderate',
+            'PS3_Moderate',
+            'PS4_Moderate',
+            'PM1',
+            'PM4',
+            'PM5',
+            'PP1_Moderate'
+          ],
+          condition: '>=2',
+          label: 'Rule2, Condition2',
+          partitionPath: 'Pathogenic.Moderate'
+        }
+      ],
+      inference: 'Pathogenic',
+      rule: 'Rule2'
+    },
+    {
+      conditions: [
+        {
+          applicableCriteriaCodes: [
+            'PS1',
+            'PS2',
+            'PS3',
+            'PS4',
+            'PP1_Strong'
+          ],
+          condition: '==1',
+          label: 'Rule20, Condition1',
+          partitionPath: 'Pathogenic.Strong'
+        },
+        {
+          applicableCriteriaCodes: [
+            'PS2_Moderate',
+            'PS3_Moderate',
+            'PS4_Moderate',
+            'PM1',
+            'PM4',
+            'PM5',
+            'PP1_Moderate'
+          ],
+          condition: '==2',
+          label: 'Rule20, Condition2',
+          partitionPath: 'Pathogenic.Moderate'
+        }
+      ],
+      inference: 'Likely Pathogenic',
+      rule: 'Rule20'
+    }
+  ],
+  statusObj: {
+    name: 'assertion computed',
+    status: 'ok'
+  }
+}
\ No newline at end of file