API.md

@@ -25,27 +25,27 @@ Assertion API endpoint for computing variant pathogenicity given a set of eviden
 > ```
 > Example of how the route works:
 
-> ```plaintext
-> const SimpleJsonReq = require( "@brl/brl-gb/client/simple/simpleJsonReq" ).SimpleJsonReq
-> let baseUrl = "https://cspec.genome.network/cspec/eng/svi"
-> let clientOpts = { timeout: 600000 }
-> let jsClient = undefined
-> let resp = undefined
-> jsClient = new SimpleJsonReq( baseUrl, clientOpts )
-> let reqConfig = {
->   serverCertCheck : false, 
->   data: payload
-> }
-> resp = await jsClient.doGet('/assertion', reqConfig)
-global.brl.dot.pick('data', resp.data)
-> { comment:
->    'Two assertions: Pathogenic and Likely Pathogenic were made. In such case the final call is the highest strength call, hence the allele is Pathogenic',
->   finalCall: 'Pathogenic',
->   rules:
->    [ { conditions: [Array], inference: 'Pathogenic', rule: 'Rule1' },
->      { conditions: [Array], inference: 'Pathogenic', rule: 'Rule2' },
->      { conditions: [Array],
->        inference: 'Likely Pathogenic',
->        rule: 'Rule20' } ],
->   statusObj: { name: 'assertion computed', status: 'ok' } }
-> ```
+```plaintext
+const SimpleJsonReq = require( "@brl/brl-gb/client/simple/simpleJsonReq" ).SimpleJsonReq
+let baseUrl = "https://cspec.genome.network/cspec/eng/svi"
+let clientOpts = { timeout: 600000 }
+let jsClient = undefined
+let resp = undefined
+jsClient = new SimpleJsonReq( baseUrl, clientOpts )
+let reqConfig = {
+  serverCertCheck : false, 
+  data: payload
+}
+resp = await jsClient.doGet('/assertion', reqConfig)
+> global.brl.dot.pick('data', resp.data)
+{ comment:
+   'Two assertions: Pathogenic and Likely Pathogenic were made. In such case the final call is the highest strength call, hence the allele is Pathogenic',
+  finalCall: 'Pathogenic',
+  rules:
+   [ { conditions: [Array], inference: 'Pathogenic', rule: 'Rule1' },
+     { conditions: [Array], inference: 'Pathogenic', rule: 'Rule2' },
+     { conditions: [Array],
+       inference: 'Likely Pathogenic',
+       rule: 'Rule20' } ],
+  statusObj: { name: 'assertion computed', status: 'ok' } }
+```
\ No newline at end of file