... | ... | @@ -2,7 +2,110 @@ Summary of actionability APIs: |
|
|
|
|
|
- Production service URL - <https://actionability.clinicalgenome.org/ac>
|
|
|
- Stage service URL - <https://actionability.test.genome.network/ac>
|
|
|
- Test BRL local - [https://genboree.org/ac ](https://genboree.org/ac)
|
|
|
- Test BRL local - <https://genboree.org/ac>
|
|
|
|
|
|
### Actionability Knowledge Repository UI API Endpoints
|
|
|
|
|
|
<table>
|
|
|
<tr>
|
|
|
<th>Label</th>
|
|
|
<th>AKR Endpoints</th>
|
|
|
<th>Comments</th>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
|
|
|
<span dir="">Total Actionability Topics</span>
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
[<span dir="">https://actionability.clinicalgenome.org/ac/?col=statusOverall&search=Released</span>](https://actionability.clinicalgenome.org/ac/?col=statusOverall&search=Released)
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
<span dir="">This is existing data (the header above the boxes), just renamed. The sum of “Total Actionability Reports” and “Total Topics Failed Early Rule-out” should equal this number</span>
|
|
|
|
|
|
<span dir="">To find these records, go to</span>[<span dir=""> AK-Repo</span>](https://actionability.clinicalgenome.org/ac/)<span dir=""> and type “released” in the search screen.</span>
|
|
|
|
|
|
* <span dir="">Includes “Released” and “Released – Under Revision.”</span>
|
|
|
* <span dir="">If there is a report for adults and peds, this should be counted as two reports.</span>
|
|
|
* <span dir="">This includes records that failed early rule out</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
|
|
|
<span dir="">Total Actionability Reports</span>
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
[<span dir="">https://actionability.clinicalgenome.org/ac/?searchType=all</span>](https://actionability.clinicalgenome.org/ac/?searchType=all)
|
|
|
|
|
|
<span dir=""> </span>
|
|
|
|
|
|
**<span dir="">_CONTEXT specific_</span>**
|
|
|
|
|
|
* [<span dir="">https://actionability.clinicalgenome.org/ac/?searchType=all&context=Adult</span>](https://actionability.clinicalgenome.org/ac/?searchType=all&context=Adult)
|
|
|
* [<span dir="">https://actionability.clinicalgenome.org/ac/?searchType=all&context=Pediatric</span>](https://actionability.clinicalgenome.org/ac/?searchType=all&context=Pediatric)
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
<span dir="">Same as “Total Actionability Topics” only exclude the records that are early rule-out</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
|
|
|
<span dir="">Total Topics Failed Early Rule-out</span>
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
[<span dir="">https://actionability.clinicalgenome.org/ac/?col=statusStg1&search=Failed</span>](https://actionability.clinicalgenome.org/ac/?col=statusStg1&search=Failed)
|
|
|
|
|
|
**<span dir="">_CONTEXT specific_</span>**
|
|
|
|
|
|
* [<span dir="">https://actionability.clinicalgenome.org/ac/Adult/ui/summ?col=status-stg1&search=Failed</span>](https://actionability.clinicalgenome.org/ac/Adult/ui/summ?col=status-stg1&search=Failed)
|
|
|
* [<span dir="">https://actionability.clinicalgenome.org/ac/Pediatric/ui/summ?col=status-stg1&search=Failed/</span>](https://actionability.clinicalgenome.org/ac/Pediatric/ui/summ?col=status-stg1&search=Failed/)
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
<span dir="">To find these records, go to</span>[<span dir=""> AK-Repo</span>](https://actionability.clinicalgenome.org/ac/)<span dir=""> and “Filter by Status” = “Ruled Out.” If there is a report for adults and peds, this should be counted as two reports.</span>
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
</tr>
|
|
|
<tr>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
<td>
|
|
|
|
|
|
</td>
|
|
|
</tr>
|
|
|
</table>
|
|
|
|
|
|
#### Variant Condition Framework Test Data
|
|
|
|
... | ... | |