The ClinGen Evidence Repository is an FDA-recognized human genetic variant database containing expert-curated assertions regarding variants' pathogenicity and supporting evidence summaries. [Disclaimer]
  • Gene obtained from curated document aligns with the Allele Registry but not with ClinVar data


Variant: NM_001114753.3(ENG):c.1645T>G (p.Cys549Gly)

CA374974153

995686 (ClinVar)

Gene: ENG
Condition: telangiectasia, hereditary hemorrhagic, type 1
Inheritance Mode: Autosomal dominant inheritance
UUID: f3f7c1fb-c482-43ee-a390-bca0624aa03a
Approved on: 2024-09-11
Published on: 2024-09-19

HGVS expressions

NM_001114753.3:c.1645T>G
NM_001114753.3(ENG):c.1645T>G (p.Cys549Gly)
NC_000009.12:g.127818161A>C
CM000671.2:g.127818161A>C
NC_000009.11:g.130580440A>C
CM000671.1:g.130580440A>C
NC_000009.10:g.129620261A>C
NG_009551.1:g.41608T>G
ENST00000480266.6:c.1099T>G
ENST00000373203.9:c.1645T>G
ENST00000344849.4:c.1645T>G
ENST00000373203.8:c.1645T>G
ENST00000480266.5:c.1099T>G
NM_000118.3:c.1645T>G
NM_001114753.2:c.1645T>G
NM_001278138.1:c.1099T>G
NR_136302.1:n.1378-150A>C
NM_001278138.2:c.1099T>G
More

Likely Pathogenic

Met criteria codes 5
PM2_Supporting PP3 PM1 PM5 PS4_Moderate

Evidence Links 0

Expert Panel

Criteria Specification Information

Criteria Specification: ClinGen Hereditary Hemorrhagic Telangiectasia Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for ENG Version 1.1.0

Criteria Specification Approval History
Criteria Specifications for this VCEP
Evidence submitted by expert panel
Hereditary Hemorrhagic Telangiectasia VCEP
The NM_001114753.3: c.1645T>G variant in ENG is a missense variant predicted to cause substitution of cysteine by glycine at amino acid 549 (p.Cys549Gly). This variant has been reported in 3 probands with a phenotype consistent with Hereditary Hemorrhagic Telangiectasia (PS4_Moderate, Internal lab contributors, Invitae, Victorian Clinical Genetics Service). This variant is absent from gnomAD v.2.1.1 (PM2_Supporting). The computational predictor REVEL gives a score of 0.861 which is above the threshold of 0.644, evidence that correlates with impact to ENG function (PP3). Another missense variant c.1646G>A, p.Cys549Tyr (PMIDs: 38828001, 20414677, 21158752; ClinVar Variation ID: 407135) in the same codon has been classified as pathogenic for Hereditary Hemorrhagic Telangiectasia by the ClinGen Hereditary Hemorrhagic Telangiectasia Variant Curation Expert Panel (PM5). This variant resides within a region, amino acid C549, of ENG that is defined as a mutational hotspot or critical functional domain by the ClinGen Hereditary Hemorrhagic Telangiectasia Variant Curation Expert Panel (PMIDs: 28564608, 25312062) (PM1). In summary, this variant meets the criteria to be classified as likely pathogenic for autosomal dominant hereditary hemorrhagic telangiectasia based on the ACMG/AMP criteria applied, as specified by the ClinGen Hereditary Hemorrhagic Telangiectasia Variant Curation Expert Panel: PS4_Moderate, PM2_Supporting, PP3, PM5, PM1 (specifications version 1.1.0; 09/11/2024).
Met criteria codes
PM2_Supporting
This variant is absent from gnomAD v.2.1.1 (PM2_Supporting).
PP3
The computational predictor REVEL gives a score of 0.861 which is above the threshold of 0.644, evidence that correlates with impact to ENG function (PP3).
PM1
This variant resides within a region, amino acid C549, of ENG that is defined as a mutational hotspot or critical functional domain by the ClinGen Hereditary Hemorrhagic Telangiectasia Variant Curation Expert Panel (PMIDs: 28564608, 25312062) (PM1).
PM5
Another missense variant c.1646G>A, p.Cys549Tyr (PMIDs: 38828001, 20414677, 21158752; ClinVar Variation ID: 407135) in the same codon has been classified as pathogenic for Hereditary Hemorrhagic Telangiectasia by the ClinGen Hereditary Hemorrhagic Telangiectasia Variant Curation Expert Panel (PM5).
PS4_Moderate
This variant has been reported in 3 probands with a phenotype consistent with Hereditary Hemorrhagic Telangiectasia (PS4_Moderate, Internal lab contributors, Invitae, Victorian Clinical Genetics Service).
Curation History
The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. If you have questions about the information contained on this website, please see a health care professional.
¤ Powered by BCM's Genboree.