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Chromatin accessibility assay of Fetal Heart Tissue
Chromatin accessibility determination via DNase-seq
Project News:
2011/1/23: EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS15839.xml' uploaded
alias: DS15839
expected_number_runs: 3 center_name: NREMC STUDY_REF: UwStam_NREMC_CA SAMPLE_DESCRIPTOR: fHeart.H-23468d96 LIBRARY LIBRARY_NAME: DS15839 LIBRARY_STRATEGY: DNase-Hypersensitivity LIBRARY_SOURCE: GENOMIC LIBRARY_SELECTION: DNAse LIBRARY_LAYOUT: SINGLE POOLING_STRATEGY: other LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina SPOT NUMBER_OF_READS_PER_SPOT: READ_INDEX: 0 READ_CLASS: Application Read READ_TYPE: Forward BASE_COORD: 1 PLATFORM ILLUMINA INSTRUMENT_MODEL: Illumina Genome Analyzer IIx SEQUENCE_LENGTH: 36 BASE CALLS SCS v2.8 QUALITY SCORES SCS v2.8 ATTRIBUTES EXPERIMENT_TYPE: Chromatin Accessibility EXTRACTION_PROTOCOL: Qiagen minElut DNASE_PROTOCOL: Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511?518 (2006) |
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