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Chromatin accessibility assay of Fetal brain tissue
Chromatin accessibility determination via DNase-seq
Project News:
2010/9/10: EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS14718.xml' uploaded
alias: DS14718
expected_number_runs: 1 expected_number_spots: 25000000 expected_number_reads: 25000000 center_name: NREMC STUDY_REF: UwStam_NREMC_CA SAMPLE_DESCRIPTOR: fBrain.H-23266d85 LIBRARY LIBRARY_NAME: DS14718 LIBRARY_STRATEGY: DNAse-Hypersensitivity LIBRARY_SOURCE: GENOMIC LIBRARY_SELECTION: DNAse LIBRARY_LAYOUT: SINGLE LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina SPOT NUMBER_OF_READS_PER_SPOT: 1 READ_INDEX: 0 READ_CLASS: Application Read READ_TYPE: Forward BASE_COORD: 1 PLATFORM ILLUMINA INSTRUMENT_MODEL: Illumina Genome Analyzer II CYCLE_SEQUENCE: 36 CYCLE_COUNT: 36 BASE CALLS SEQUENCE_SPACE: Base Space BASE_CALLER: Bustard 1.8.0 QUALITY SCORES Quality Type: other QUALITY_SCORER: Illumina primary analysis NUMBER_OF_LEVELS: 80 MULTIPLIER: 1.0 ATTRIBUTES EXPERIMENT_TYPE: Chromatin Accessibility EXTRACTION_PROTOCOL: Qiagen minElut DNASE_PROTOCOL: Stamlab DNase Protocol |
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