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RNA-Seq (Total RNA) Fetal Stomach
RNA-Seq (Total RNA) Fetal Stomach
Project News:
2013/8/14: EXPERIMENT XML file 'NREMC.experiment.SE-mRNA-seq.qiagen.RS18244.xml' uploaded
expected_number_runs: 1
center_name: NREMC alias: RNA.RS18244 STUDY_REF: UwStam_NREMC_CA SAMPLE_DESCRIPTOR: SRS183550 LIBRARY LIBRARY_NAME: lib-RNA.RS18244 LIBRARY_STRATEGY: mRNA-Seq LIBRARY_SOURCE: TRANSCRIPTOMIC LIBRARY_SELECTION: cDNA LIBRARY_LAYOUT: PAIRED POOLING_STRATEGY: none LIBRARY_CONSTRUCTION_PROTOCOL: Illumina TruSeq RNA PART# 15008136 REVISION A SPOT NUMBER_OF_READS_PER_SPOT: 1 READ_INDEX: 0 READ_CLASS: Application Read READ_TYPE: Forward BASE_COORD: 1 PLATFORM ILLUMINA INSTRUMENT_MODEL: Illumina HiSeq 2000 SEQUENCE_LENGTH: 36 BASE CALLS Illumina RTA 1.12.4.2 QUALITY SCORES Illumina RTA 1.12.4.2 ATTRIBUTES EXPERIMENT_TYPE: mRNA-Seq EXTRACTION_PROTOCOL: Qiagen TissueLyser and RNeasy Lipid Tx Mini kit EXTRACTION_PROTOCOL_MRNA_ENRICHMENT: Part of Library Prep, Truseq RNA-Seq Sample Prep Kit RNA_PREPARATION_INITIAL_RNA_QNTY: 1ug RNA_PREPARATION_REVERSE_TRANSCRIPTION_PRIMER_SEQUENCE: Random Primers(hexamers) RNA_PREPARATION_REVERSE_TRANSCRIPTION_PROTOCOL: TruSeq RNA LIBRARY_GENERATION_PCR_TEMPLATE: cDNA LIBRARY_FRAGMENTATION: Part of Library Prep, Truseq RNA-Seq Sample Prep Kit LIBRARY_FRAGMENT_SIZE_RANGE: 120-200bp LIBRARY_GENERATION_PCR_POLYMERASE_TYPE: Proprietary LIBRARY_GENERATION_PCR_THERMOCYCLING_PROGRAM: 98C 30 sec, 15 cycles of 98C 10 sec, 65C 30 sec, 72C 30 sec, then 72C 5 min, 4C hold LIBRARY_GENERATION_PCR_NUMBER_CYCLES: 15 LIBRARY_GENERATION_PCR_F_PRIMER_SEQUENCE: Proprietary LIBRARY_GENERATION_PCR_R_PRIMER_SEQUENCE: Proprietary LIBRARY_GENERATION_PCR_PRIMER_CONC: Proprietary LIBRARY_GENERATION_PCR_PRODUCT_ISOLATION_PROTOCOL: Part of Library Prep, Truseq RNA-Seq Sample Prep Kit |
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