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Chromatin accessibility assay of human CD34 Primary Cells
Chromatin accessibility determination via DNase-seq


Project News:
2009/11/2:
EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS11202.xml' uploaded



alias: DS11202
expected_number_runs: 3
expected_number_spots: 30000000
expected_number_reads: 30000000
center_name: NREMC

STUDY_REF: UwStam_NREMC_CA
SAMPLE_DESCRIPTOR: RO 01508

LIBRARY
LIBRARY_NAME: DS11202
LIBRARY_STRATEGY: DNAse-Hypersensitivity
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: DNAse
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina

SPOT
SPOT_DECODE_SPEC: 1 0 Application Read Forward 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: 36
CYCLE_COUNT: 36

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Bustard1.4.0

QUALITY SCORES
Quality Type: other
QUALITY_SCORER: Solexa primary analysis
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1.0

ATTRIBUTES
EXPERIMENT_TYPE: Chromatin Accessibility
EXTRACTION_PROTOCOL: Qiagen minElut
DNASE_PROTOCOL: Stamlab DNase Protocol

 

 


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