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Digital Genomic Footprinting assay of Penis Foreskin Fibroblast Primary Cells
Digital Genomic Footprinting determination via DNase-seq
Project News:
2012/3/30: EXPERIMENT XML file 'NREMC.experiment.digitalGenomicFootprinting.DS18224.xml' uploaded
alias: DGF.DS18224
expected_number_runs: 4 center_name: NREMC STUDY_REF: UwStam_NREMC_CA SAMPLE_DESCRIPTOR: SRS188630 LIBRARY LIBRARY_NAME: DGF.DS18224 LIBRARY_STRATEGY: DNase-Hypersensitivity LIBRARY_SOURCE: GENOMIC LIBRARY_SELECTION: DNAse LIBRARY_LAYOUT: SINGLE POOLING_STRATEGY: other LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina SPOT NUMBER_OF_READS_PER_SPOT: READ_INDEX: 0 READ_CLASS: Application Read READ_TYPE: Forward BASE_COORD: 1 PLATFORM ILLUMINA INSTRUMENT_MODEL: Illumina HiSeq 2000 SEQUENCE_LENGTH: 36 BASE CALLS SCS v2.8 QUALITY SCORES SCS v2.8 ATTRIBUTES EXPERIMENT_TYPE: Digital Genomic Footprinting EXTRACTION_PROTOCOL: Qiagen minElut DNASE_PROTOCOL: Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511?518 (2006) |
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