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Chromatin accessibility assay of Fetal Brain
Chromatin accessibility determination via DNase-seq
Project News:
2012/2/17: EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS20231.xml' uploaded
alias: DS20231
expected_number_runs: 2 center_name: NREMC STUDY_REF: UwStam_NREMC_CA SAMPLE_DESCRIPTOR: fBrain.H-24381d109 LIBRARY LIBRARY_NAME: DS20231 LIBRARY_STRATEGY: DNase-Hypersensitivity LIBRARY_SOURCE: GENOMIC LIBRARY_SELECTION: DNAse LIBRARY_LAYOUT: SINGLE POOLING_STRATEGY: other LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina SPOT NUMBER_OF_READS_PER_SPOT: READ_INDEX: 0 READ_CLASS: Application Read READ_TYPE: Forward BASE_COORD: 1 PLATFORM ILLUMINA INSTRUMENT_MODEL: Illumina HiSeq 2000 SEQUENCE_LENGTH: 36 BASE CALLS RTA 1.12.4.2 QUALITY SCORES RTA 1.12.4.2 ATTRIBUTES EXPERIMENT_TYPE: Chromatin Accessibility EXTRACTION_PROTOCOL: Qiagen minElut DNASE_PROTOCOL: http://www.roadmapepigenomics.org/protocols/type/experimental/ |
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