Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Chromatin accessibility assay of H9 Cell Line
Chromatin accessibility determination via DNase-seq


Project News:
2012/2/15:
EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS18517.xml' uploaded



alias: DS18517
expected_number_runs: 2
center_name: NREMC

STUDY_REF: UwStam_NREMC_CA
SAMPLE_DESCRIPTOR: SRS184463

LIBRARY
LIBRARY_NAME: DS18517
LIBRARY_STRATEGY: DNase-Hypersensitivity
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: DNAse
LIBRARY_LAYOUT: SINGLE
POOLING_STRATEGY: other
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina

SPOT
NUMBER_OF_READS_PER_SPOT:
READ_INDEX: 0
READ_CLASS: Application Read
READ_TYPE: Forward
BASE_COORD: 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina HiSeq 2000
SEQUENCE_LENGTH: 36

BASE CALLS
RTA 1.12.4.2

QUALITY SCORES
RTA 1.12.4.2

ATTRIBUTES
EXPERIMENT_TYPE: Chromatin Accessibility
EXTRACTION_PROTOCOL: Qiagen minElut
DNASE_PROTOCOL: http://www.roadmapepigenomics.org/protocols/type/experimental/

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)