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Reference Epigenome: ChIP-Seq Analysis of H3K27ac in Human Sigmoid Colon Tissue
ChIP-Seq Analysis of H3K27ac in Human Sigmoid Colon Tissue. Sequencing was done on the Illumina HiSeq 2000 platform.
Project News:
2014/7/26: EXPERIMENT XML file 'renlab.H3K27ac.STL003.02.01.experiment.xml' uploaded
alias: renlab.H3K27ac.STL003SG.02.01
expected_number_runs: 1 center_name: UCSD STUDY_REF: The San Diego Epigenome Center SAMPLE_DESCRIPTOR: SRS306624 LIBRARY LIBRARY_NAME: AY94 LIBRARY_STRATEGY: ChIP-Seq LIBRARY_SOURCE: GENOMIC LIBRARY_SELECTION: ChIP LIBRARY_LAYOUT: PAIRED POOLING_STRATEGY: none LIBRARY_CONSTRUCTION_PROTOCOL: See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf SPOT NUMBER_OF_READS_PER_SPOT: 2 READ_INDEX: 0 READ_CLASS: Application Read READ_TYPE: Forward BASE_COORD: 1 READ_INDEX: 2 READ_CLASS: Application Read READ_TYPE: Reverse BASE_COORD: 77 PLATFORM ILLUMINA INSTRUMENT_MODEL: Illumina HiSeq 2000 SEQUENCE_LENGTH: 100 BASE CALLS Illumina HiSeq Control Software 2.0.12.0 QUALITY SCORES Illumina HiSeq Control Software 2.0.12.0 ATTRIBUTES EXPERIMENT_TYPE: Histone H3K27ac EXTRACTION_PROTOCOL: See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Biorupter EXTRACTION_PROTOCOL_SONICATION_CYCLES: 80 CHIP_PROTOCOL: See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf CHIP_PROTOCOL_CHROMATIN_AMOUNT: 500 micrograms CHIP_PROTOCOL_BEAD_TYPE: magnetic anti-rabbit CHIP_PROTOCOL_BEAD_AMOUNT: 33,500,000 CHIP_PROTOCOL_ANTIBODY_AMOUNT: 5 micrograms CHIP_ANTIBODY: H3K27ac CHIP_ANTIBODY_PROVIDER: Active Motif CHIP_ANTIBODY_CATALOG: 39133 CHIP_ANTIBODY_LOT: 19208002 |
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