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Raw Signal Density Graphs of Breast Stem Cells smRNA-Seq Data
Illumina smRNA-Seq read mappings from Breast Stem Cells, Donor RM080 were processed into density graphs of raw signal representing the aligned read density. If a read maps to more than one location, the density of that read at a specific location is calculated as 1/(number of mappings).

Project News:
2011/8/30:
ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.2.xml' uploaded


alias: M00740-1.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_Stem_Cells.smRNA-Seq.RM080.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: BSC smRNA 80
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Breast Stem Cells smRNA-Seq Donor RM080 Library M00740-1 EA Release 4
NUMBER_OF_MAPPED_READS: 4,613,874
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 46.42
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA_PERCENTILE: 7
MAXIMUM_REPLICATE_CORRELATION: NA

 

 

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