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Mapping of Neurosphere Cultured Cells Ganglionic Eminence Derived smRNA-Seq Data
Illumina reads produced by smRNA-Seq on Neurosphere Cultured Cells Ganglionic Eminence Derived, Donor HuFNSC01 were mapped to the human genome using Pash.
Project News:
2011/8/30:
ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.1.xml' uploaded
alias: M01578-1.hg19.level.1.release4
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.smRNA-Seq.HuFNSC01.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 100
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 100 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 4
NUMBER_OF_MAPPED_READS: 3,918,576
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 88.78
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA_PERCENTILE: 73
MAXIMUM_REPLICATE_CORRELATION: 0.998
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.smRNA-Seq.HuFNSC01.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 100
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 100 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 4
NUMBER_OF_MAPPED_READS: 3,918,576
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 88.78
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA_PERCENTILE: 73
MAXIMUM_REPLICATE_CORRELATION: 0.998
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