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Methylation Proportion Graphs of Fetal Brain RRBS Data
Illumina RRBS read mappings from Fetal Brain, Donor H-22510 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.
Project News:
2011/7/28: ANALYSIS XML file 'bi.rrbs.level.2.xml' uploaded
alias: RRBS1079.hg19.level.2.release.4
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: BI.Fetal_Brain.RRBS.H-22510.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 0bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None GENOMIC_WINDOW: 2bp containing CpGs TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 4 BROWSER_TRACK_NAME: FB RRBS 10 79 BROWSER_TRACK_DESCRIPTION: BI Fetal Brain RRBS Donor H-22510 Library RRBS1079 EA Release 4 NUMBER_OF_MAPPED_READS: 23,231,079 NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21 BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.3 BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 10 MAXIMUM_REPLICATE_CORRELATION: 0.71 |
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