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Methylation Proportion Graphs of Fetal Brain RRBS Data
Illumina RRBS read mappings from Fetal Brain, Donor H-22510 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.
Project News:
2011/7/28:
ANALYSIS XML file 'bi.rrbs.level.2.xml' uploaded
alias: RRBS1079.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Fetal_Brain.RRBS.H-22510.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FB RRBS 10 79
BROWSER_TRACK_DESCRIPTION: BI Fetal Brain RRBS Donor H-22510 Library RRBS1079 EA Release 4
NUMBER_OF_MAPPED_READS: 23,231,079
NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.3
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 10
MAXIMUM_REPLICATE_CORRELATION: 0.71
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Fetal_Brain.RRBS.H-22510.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FB RRBS 10 79
BROWSER_TRACK_DESCRIPTION: BI Fetal Brain RRBS Donor H-22510 Library RRBS1079 EA Release 4
NUMBER_OF_MAPPED_READS: 23,231,079
NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.3
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 10
MAXIMUM_REPLICATE_CORRELATION: 0.71
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