|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Methylation Proportion Graphs of Mobilized CD34 Primary Cells RRBS Data
Illumina RRBS read mappings from Mobilized CD34 Primary Cells, Donor RO 01536 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.
Project News:
2011/7/28:
ANALYSIS XML file 'bi.rrbs.level.2.xml' uploaded
alias: RRBS1241.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Mobilized_CD34_Primary_Cells.RRBS.RO_01536.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: MCD34 RRBS 36 41
BROWSER_TRACK_DESCRIPTION: BI Mobilized CD34 Primary Cells RRBS Donor RO 01536 Library RRBS1241 EA Release 4
NUMBER_OF_MAPPED_READS: 21,926,201
NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.76
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.86
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Mobilized_CD34_Primary_Cells.RRBS.RO_01536.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: MCD34 RRBS 36 41
BROWSER_TRACK_DESCRIPTION: BI Mobilized CD34 Primary Cells RRBS Donor RO 01536 Library RRBS1241 EA Release 4
NUMBER_OF_MAPPED_READS: 21,926,201
NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.76
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.86
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |