|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of iPS DF 19.11 Cell Line Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from the iPS DF 19.11 Cell Line, Library SK401 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/7/27:
ANALYSIS XML file 'ucsd-chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me1.iPS-19.11_01.01.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_19.11.H3K4me1.SK401.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD19.11 H3K4me1 01
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 19.11 Cell Line Histone H3K4me1 Library SK401 EA Release 4
NUMBER_OF_MAPPED_READS: 23,918,857
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12
FINDPEAKS_SCORE: 0.2082
FINDPEAKS_PERCENTILE: 31
HOTSPOT_SCORE: 0.3031
HOTSPOT_PERCENTILE: 31
IROC_SCORE: 0.9565
IROC_PERCENTILE: 25
POISSON_SCORE: 0.4344
POISSON_PERCENTILE: 31
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_19.11.H3K4me1.SK401.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD19.11 H3K4me1 01
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 19.11 Cell Line Histone H3K4me1 Library SK401 EA Release 4
NUMBER_OF_MAPPED_READS: 23,918,857
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12
FINDPEAKS_SCORE: 0.2082
FINDPEAKS_PERCENTILE: 31
HOTSPOT_SCORE: 0.3031
HOTSPOT_PERCENTILE: 31
IROC_SCORE: 0.9565
IROC_PERCENTILE: 25
POISSON_SCORE: 0.4344
POISSON_PERCENTILE: 31
MAXIMUM_REPLICATE_CORRELATION: NA
|
© 2001-2025 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |