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Raw Signal Density Graphs of iPS DF 6.9 Cell Line Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from the iPS DF 6.9 Cell Line, Library SK398 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/7/27:
ANALYSIS XML file 'ucsd-chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me3.iPS-6.9_01.01.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_6.9.H3K4me3.SK398.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD6.9 H3K4me3 98
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 6.9 Cell Line Histone H3K4me3 Library SK398 EA Release 4
NUMBER_OF_MAPPED_READS: 22,938,026
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 8
FINDPEAKS_SCORE: 0.5322
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.5371
HOTSPOT_PERCENTILE: 38
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.5307
POISSON_PERCENTILE: 38
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_6.9.H3K4me3.SK398.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD6.9 H3K4me3 98
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 6.9 Cell Line Histone H3K4me3 Library SK398 EA Release 4
NUMBER_OF_MAPPED_READS: 22,938,026
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 8
FINDPEAKS_SCORE: 0.5322
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.5371
HOTSPOT_PERCENTILE: 38
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.5307
POISSON_PERCENTILE: 38
MAXIMUM_REPLICATE_CORRELATION: NA
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