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Raw Signal Density Graphs of Fetal Brain ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Fetal Brain, Donor UW H22676 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/7/27:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 390.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Fetal_Brain.Input.UW_H22676.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FB Input 76 90
BROWSER_TRACK_DESCRIPTION: BI Fetal Brain ChIP-Seq Input Donor UW H22676 Library DNA_Lib 390 EA Release 4
NUMBER_OF_MAPPED_READS: 15,984,962
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.0079
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.0749
HOTSPOT_PERCENTILE: 92
IROC_SCORE: 0.9676
IROC_PERCENTILE: 42
POISSON_SCORE: 0.099
POISSON_PERCENTILE: 92
MAXIMUM_REPLICATE_CORRELATION: 0.56
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Fetal_Brain.Input.UW_H22676.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FB Input 76 90
BROWSER_TRACK_DESCRIPTION: BI Fetal Brain ChIP-Seq Input Donor UW H22676 Library DNA_Lib 390 EA Release 4
NUMBER_OF_MAPPED_READS: 15,984,962
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.0079
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.0749
HOTSPOT_PERCENTILE: 92
IROC_SCORE: 0.9676
IROC_PERCENTILE: 42
POISSON_SCORE: 0.099
POISSON_PERCENTILE: 92
MAXIMUM_REPLICATE_CORRELATION: 0.56
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