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Raw Signal Density Graphs of Breast Luminal Epithelial Cells Histone H3K27me3 ChIP-Seq Data
Illumina Histone H3K27me3 ChIP-Seq read mappings from Breast Luminal Epithelial Cells, Donor RM080 were processed into density graphs of raw signal representing the aligned read density.


Project News:
2011/7/27:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded



alias: HS2794-1.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K27me3.RM080.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: BLEC H3K27me3 80
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Breast Luminal Epithelial Cells Histone H3K27me3 Donor RM080 Library HS2794-1 EA Release 4
NUMBER_OF_MAPPED_READS: 10,903,725
NUMBER_OF_H3K27me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 11
FINDPEAKS_SCORE: 0.1406
FINDPEAKS_PERCENTILE: 45
HOTSPOT_SCORE: 0.28
HOTSPOT_PERCENTILE: 64
IROC_SCORE: 0.8945
IROC_PERCENTILE: 18
POISSON_SCORE: 0.437
POISSON_PERCENTILE: 73
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


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