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Raw Signal Density Graphs of CD4 Primary Cells Chromatin Accessibility Data
Illumina DNAse-Seq read mappings from CD4 Primary Cells, Donor RO 01736, Library DS17881 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/6/22:
ANALYSIS XML file 'uw.chromatin.accessibility.level.2.release.4.xml' uploaded
alias: DS17881.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.CD4_Primary_Cells.ChromatinAccessibility.RO_01701.DS17881.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 150bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: CD4 DNase 36 81
BROWSER_TRACK_DESCIPTION: UW CD4 Primary Cells DNase Hypersensitivity Donor RO 01701 Library DS17881 EA Release 4
NUMBER_OF_MAPPED_READS: 30,073,018
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 52
FINDPEAKS_SCORE: 0.5922
FINDPEAKS_PERCENTILE: 96
HOTSPOT_SCORE: 0.6006
HOTSPOT_PERCENTILE: 98
IROC_SCORE: 0.9858
IROC_PERCENTILE: 7
POISSON_SCORE: 0.5629
POISSON_PERCENTILE: 93
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.CD4_Primary_Cells.ChromatinAccessibility.RO_01701.DS17881.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 150bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: CD4 DNase 36 81
BROWSER_TRACK_DESCIPTION: UW CD4 Primary Cells DNase Hypersensitivity Donor RO 01701 Library DS17881 EA Release 4
NUMBER_OF_MAPPED_READS: 30,073,018
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 52
FINDPEAKS_SCORE: 0.5922
FINDPEAKS_PERCENTILE: 96
HOTSPOT_SCORE: 0.6006
HOTSPOT_PERCENTILE: 98
IROC_SCORE: 0.9858
IROC_PERCENTILE: 7
POISSON_SCORE: 0.5629
POISSON_PERCENTILE: 93
MAXIMUM_REPLICATE_CORRELATION: 0.99
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