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Mapping of Fetal Renal Pelvis Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Renal Pelvis, Donor H-23833, Library DS17451 were mapped to the human genome using Pash.
Project News:
2011/6/22: ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release.4.xml' uploaded
alias: DS17451.hg19.level.1.release.4
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UW.Fetal_Renal_Pelvis.ChromatinAccessibility.H-23833.DS17451.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: Chromatin Accessibility GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 4 NUMBER_OF_MAPPED_READS: 36,563,105 NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54 FINDPEAKS_SCORE: 0.3838 FINDPEAKS_PERCENTILE: 50 HOTSPOT_SCORE: 0.3726 HOTSPOT_PERCENTILE: 46 IROC_SCORE: 0.9905 IROC_PERCENTILE: 17 POISSON_SCORE: 0.4517 POISSON_PERCENTILE: 57 MAXIMUM_REPLICATE_CORRELATION: 0.98 |
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