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Mapping of Fetal Heart Digital Genomic Footprinting Data
Illumina reads produced by Digital Genomic Footprinting on Fetal Heart, Donor H-22662, Library DGF.DS12531 were mapped to the human genome using Pash.


Project News:
2011/6/14:
ANALYSIS XML file 'uw.digitalGenomicFootprinting.level.1.xml' uploaded



alias: DGF.DS12531.hg19.level.1.release.4
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Heart.Digital_Genomic_Footprinting.H-22662.DGF.DS12531.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Digital Genomic Footprinting
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 4
NUMBER_OF_MAPPED_READS: 282,391,646
NUMBER_OF_DIGITAL_GENOMIC_FOOTPRINTING_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 5
FINDPEAKS_SCORE: 0.5452
FINDPEAKS_PERCENTILE: 40
HOTSPOT_SCORE: 0.5269
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.5695
POISSON_PERCENTILE: 40

 

 


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