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Raw Signal Density Graphs of Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Histone H3K36me3 ChIP-Seq Data
Illumina Histone H3K36me3 ChIP-Seq read mappings from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells, Donor 60 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18:
ANALYSIS XML file 'bi.chip-seq.level.2.release.3.xml' uploaded
alias: Lib:MC:20100713:10--ChIP:MC:20100706:10:BM-MSC:H3K36Me3.hg19.level.2.release.3
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K36me3.60.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: BMDMSC H3K36me3 60
BROWSER_TRACK_DESCRIPTION: BI Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Histone H3K36me3 Donor 60 Library Lib:MC:20100713:10--ChIP:MC:20100706:10:BM-MSC:H3K36Me3 EA Release 3
NUMBER_OF_H3K36me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 59
FINDPEAKS_SCORE: 0.146
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.194
HOTSPOT_PERCENTILE: 35
IROC_SCORE: 0.9463
IROC_PERCENTILE: 38
POISSON_SCORE: 0.4134
POISSON_PERCENTILE: 38
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K36me3.60.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: BMDMSC H3K36me3 60
BROWSER_TRACK_DESCRIPTION: BI Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells Histone H3K36me3 Donor 60 Library Lib:MC:20100713:10--ChIP:MC:20100706:10:BM-MSC:H3K36Me3 EA Release 3
NUMBER_OF_H3K36me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 59
FINDPEAKS_SCORE: 0.146
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.194
HOTSPOT_PERCENTILE: 35
IROC_SCORE: 0.9463
IROC_PERCENTILE: 38
POISSON_SCORE: 0.4134
POISSON_PERCENTILE: 38
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