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Raw Signal Density Graphs of Fetal Brain Histone H3K9ac ChIP-Seq Data
Illumina Histone H3K9ac ChIP-Seq read mappings from Fetal Brain, Donor HuFNSC-T were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.release.3.xml' uploaded
alias: A02879-1.hg19.level.2.release.3
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Fetal_Brain.H3K9ac.HuFNSC-T.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: FB H3K9ac T
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Fetal Brain Histone H3K9ac Donor HuFNSC-T Library A02879-1 EA Release 3
NUMBER_OF_H3K9ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 25
FINDPEAKS_SCORE: 0.1226
FINDPEAKS_PERCENTILE: 32
HOTSPOT_SCORE: 0.1731
HOTSPOT_PERCENTILE: 20
IROC_SCORE: 0.9952
IROC_PERCENTILE: 72
POISSON_SCORE: 0.2807
POISSON_PERCENTILE: 36
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Fetal_Brain.H3K9ac.HuFNSC-T.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: FB H3K9ac T
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Fetal Brain Histone H3K9ac Donor HuFNSC-T Library A02879-1 EA Release 3
NUMBER_OF_H3K9ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 25
FINDPEAKS_SCORE: 0.1226
FINDPEAKS_PERCENTILE: 32
HOTSPOT_SCORE: 0.1731
HOTSPOT_PERCENTILE: 20
IROC_SCORE: 0.9952
IROC_PERCENTILE: 72
POISSON_SCORE: 0.2807
POISSON_PERCENTILE: 36
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