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Raw Signal Density Graphs of Breast Luminal Epithelial Cells Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from Breast Luminal Epithelial Cells, Donor RM080 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18: ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.release.3.xml' uploaded
alias: HS2791-1.hg19.level.2.release.3
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K4me1.RM080.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 3 BROWSER_TRACK_NAME: BLEC H3K4me1 80 BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Breast Luminal Epithelial Cells Histone H3K4me1 Donor RM080 Library HS2791-1 EA Release 3 NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 28 FINDPEAKS_SCORE: 0.3209 FINDPEAKS_PERCENTILE: 54 HOTSPOT_SCORE: 0.4115 HOTSPOT_PERCENTILE: 54 IROC_SCORE: 0.9699 IROC_PERCENTILE: 43 POISSON_SCORE: 0.5061 POISSON_PERCENTILE: 46 |
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