|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of H9 Cell Line ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the H9 Cell Line, Library SKH9-4 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18:
ANALYSIS XML file 'ucsd.chip-seq.level.2.release.3.xml' uploaded
alias: renlab.Input.hESC.H9.01.01.hg19.level.2.release.3
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H9.Input.SKH9-4.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: H9 Input 4 01
BROWSER_TRACK_DESCRIPTION: UCSD H9 Cell Line ChIP-Seq Input Library SKH9-4 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 30
FINDPEAKS_SCORE: 0.0124
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.0778
HOTSPOT_PERCENTILE: 90
IROC_SCORE: 0.9959
IROC_PERCENTILE: 59
POISSON_SCORE: 0.0966
POISSON_PERCENTILE: 87
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H9.Input.SKH9-4.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: H9 Input 4 01
BROWSER_TRACK_DESCRIPTION: UCSD H9 Cell Line ChIP-Seq Input Library SKH9-4 EA Release 2
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 30
FINDPEAKS_SCORE: 0.0124
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.0778
HOTSPOT_PERCENTILE: 90
IROC_SCORE: 0.9959
IROC_PERCENTILE: 59
POISSON_SCORE: 0.0966
POISSON_PERCENTILE: 87
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |