|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Mapping of Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells, Donor 58 were mapped to the human genome using Pash.
Project News:
2011/3/17:
ANALYSIS XML file 'bi.chip-seq.level.1.release.3.xml' uploaded
alias: Lib:MC:20100726:14--ChIP:MC:20100713:14:chondrogenic dif cells:WCE.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Chondrocytes_from_Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.58.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 61
FINDPEAKS_SCORE: 0.0069
FINDPEAKS_PERCENTILE: 60
HOTSPOT_SCORE: 0.0151
HOTSPOT_PERCENTILE: 60
IROC_SCORE: 0.0
IROC_PERCENTILE: 38
POISSON_SCORE: 0.059
POISSON_PERCENTILE: 57
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Chondrocytes_from_Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.58.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 61
FINDPEAKS_SCORE: 0.0069
FINDPEAKS_PERCENTILE: 60
HOTSPOT_SCORE: 0.0151
HOTSPOT_PERCENTILE: 60
IROC_SCORE: 0.0
IROC_PERCENTILE: 38
POISSON_SCORE: 0.059
POISSON_PERCENTILE: 57
|
© 2001-2025 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |