Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Mapping of CD3 Primary Cells Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on CD3 Primary Cells, Donor RO 01721, Library DS17198 were mapped to the human genome using Pash.


Project News:
2011/3/17:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release.3.xml' uploaded



alias: DS17198.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.CD3_Primary_Cells.ChromatinAccessibility.RO_01721.DS17198.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 39
FINDPEAKS_SCORE: 0.4798
FINDPEAKS_PERCENTILE: 82
HOTSPOT_SCORE: 0.4876
HOTSPOT_PERCENTILE: 82
IROC_SCORE: 0.9973
IROC_PERCENTILE: 95
POISSON_SCORE: 0.4584
POISSON_PERCENTILE: 54

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)