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Raw Signal Density Graphs of Neurosphere Cultured Cells Cortex Derived MeDIP-Seq Data
Illumina MeDIP-Seq read mappings from Neurosphere Cultured Cells Cortex Derived, Donor HuFNSC02 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/16:
ANALYSIS XML file 'ucsf-ubc.medip.level.2.release.3.xml' uploaded
alias: HS2779-1.hg19.level.2.release.3
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Cortex_Derived.MeDIP-Seq.HuFNSC02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: NCD MeDIP 02
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Neurosphere Cultured Cells Cortex Derived MeDIP-Seq Donor HuFNSC02 Library HS2779-1 EA Release 3
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 10
FINDPEAKS_SCORE: 0.2585
FINDPEAKS_PERCENTILE: 90
HOTSPOT_SCORE: 0.3754
HOTSPOT_PERCENTILE: 90
IROC_SCORE: 0.9538
IROC_PERCENTILE: 90
POISSON_SCORE: 0.4854
POISSON_PERCENTILE: 90
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Cortex_Derived.MeDIP-Seq.HuFNSC02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: NCD MeDIP 02
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Neurosphere Cultured Cells Cortex Derived MeDIP-Seq Donor HuFNSC02 Library HS2779-1 EA Release 3
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 10
FINDPEAKS_SCORE: 0.2585
FINDPEAKS_PERCENTILE: 90
HOTSPOT_SCORE: 0.3754
HOTSPOT_PERCENTILE: 90
IROC_SCORE: 0.9538
IROC_PERCENTILE: 90
POISSON_SCORE: 0.4854
POISSON_PERCENTILE: 90
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