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Mapping of Breast Myoepithelial Cells mRNA-Seq Data
Illumina reads produced by mRNA-Seq on Breast Myoepithelial Cells, Donor RM080 were mapped to the human genome using Pash.
Project News:
2011/3/16: ANALYSIS XML file 'ucsf-ubc.mrna-seq.level.1.release.3.xml' uploaded
alias: A01030-1.hg19.level.1.release.3
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Breast_Myoepithelial_Cells.mRNA-Seq.RM080.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: mRNA-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 3 NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 7 PERCENT_READS_MAPPING_TO_UCSC_GENES: 91.0 PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 29 |
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