Genboree BCM
Home Browser Tools Log Out Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Methylation Proportion Graphs of iPS-18c Cell Line RRBS Data
Illumina RRBS read mappings from the iPS-18c Cell Line, Libraries RRBS524-525 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.

Project News:
2010/11/7:
ANALYSIS XML file 'bi.rrbs.level.2.xml' uploaded


alias: RRBS524-RRBS525.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.iPS-18c.RRBS.RRBS524-525.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: iPS18c RRBS 24
BROWSER_TRACK_DESCRIPTION: BI iPS-18c Cell Line RRBS Libraries RRBS524-525 EA Release 2
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 97.9

 

 

Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)