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Methylation Proportion Graphs of CD19 Primary Cells RRBS Data
Illumina RRBS read mappings from CD19 Primary Cells, Donor CD19_0/0/00 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.
Project News:
2010/11/7:
ANALYSIS XML file 'bi.rrbs.level.2.xml' uploaded
alias: 42TY1AAXX100126-6-S-42TWHAAXX100222-1-S.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD19_Primary_Cells.RRBS.CD19_0_0_00.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: CD19 RRBS 0
BROWSER_TRACK_DESCRIPTION: BI CD19 Primary Cells RRBS Donor CD19_0/0/00 EA Release 2
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.37
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD19_Primary_Cells.RRBS.CD19_0_0_00.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: CD19 RRBS 0
BROWSER_TRACK_DESCRIPTION: BI CD19 Primary Cells RRBS Donor CD19_0/0/00 EA Release 2
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.37
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