|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Mapping of Breast vHMEC smRNA-Seq Data
Illumina reads produced by smRNA-Seq on Breast vHMEC, Donor RM035 were mapped to the human genome using Pash.
Project News:
2010/11/5:
ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.1-2.xml' uploaded
alias: HS1740-1_430N8AAXX.hg19.level.1
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Breast_vHMEC.smRNA-Seq.RM035.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 100
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 100 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 84.41
PERCENT_READS_MAPPING_TO_REPEATMASKER_RNA_REPEATS: 5.0
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Breast_vHMEC.smRNA-Seq.RM035.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 100
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 100 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 2
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 84.41
PERCENT_READS_MAPPING_TO_REPEATMASKER_RNA_REPEATS: 5.0
|
© 2001-2025 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |