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Methylation Proportion Graphs of IMR90 Cell Line Bisulfite-Seq Data
Illumina Bisulfite-Seq read mappings from the IMR90 Cell Line, Library methylC-seq_imr90_r1b were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads. Reads from the + and - strands were combined for methylation proportion calculations.
Project News:
2010/11/4: ANALYSIS XML file 'ucsd.bisulfite-seq.level.2.wig.xml' uploaded
alias: methylC-seq_imr90_r1b.hg19.level.2
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.IMR90.Bisulfite-Seq.methylC-seq_imr90_r1b.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: Bisulfite-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 0bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 2bp containing CpGs TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 2 BROWSER_TRACK_NAME: IMR90 BS 1b BROWSER_TRACK_DESCRIPTION: UCSD IMR90 Cell Line Bisulfite-Seq Library methylC-seq_imr90_r1b EA Release 2 NUMBER_OF_Bisulfite-Seq_EXPERIMENTS_SCORED: 17 BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.49 BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 94 |
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